Alignment of alleles: Atlantic cod (Gadus morhua) IGIV1S29

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 A   L   V   L   T   Q   E   K   T       L   S   V   N   R   G   D   N   V   K
  AJ293808,IGIV1S29*01          GCT CTC GTT TTA ACC CAG GAG AAG ACC ... CTC TCT GTG AAC AGA GGA GAC AAT GTC AAA

  AJ293807,IGIV1S29*02          --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---

                                                         __________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   S   C   T   E   T   D   S   S   S   N   Y   V                       L   T
  AJ293808,IGIV1S29*01          ATA TCC TGC ACT GAA ACT GAC AGC AGC AGC AAC TAT GTG ... ... ... ... ... TTG ACC

  AJ293807,IGIV1S29*02          --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- ---

                                                                                             ______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   K   S   G   S   P   P   K   Y   L   L   T   T   T   G
  AJ293808,IGIV1S29*01          TGG TAC CAG CAG AAG AGT GGT TCA CCG CCA AAG TAT TTA CTT ACC ACA ACA GGC ... ...

  AJ293807,IGIV1S29*02          --- --- --- --- --- --- --- --- --A --- --- --- --- --- --- --- --- --- ... ...

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     S   R   A   S   G   I   P       S   R   F   T   G   S   G
  AJ293808,IGIV1S29*01          ... ... ... ... ... AGT AGG GCA AGT GGC ATT CCC ... AGT AGG TTT ACT GGT TCT GGT

  AJ293807,IGIV1S29*02          ... ... ... ... ... --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 T   K   N   D   K   T   E   Y   L   L   I   N   G   I   Q   D   E   D   E   A
  AJ293808,IGIV1S29*01          ACA AAA AAT GAC AAA ACA GAG TAT CTA CTG ATT AAT GGC ATT CAA GAT GAA GAC GAG GCG

  AJ293807,IGIV1S29*02          --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                __________CDR3-IMGT____________
                                101 102 103 104 105 106 107 108 109 110 111 112
                                 T   Y   Y   C   A   C   V   G   C   G   A   N
  AJ293808,IGIV1S29*01          ACA TAC TAC TGT GCG TGT GTC GGC TGT GGT GCA AAC

  AJ293807,IGIV1S29*02          --- --- --- --- --- --- --- --- --- --- ---      #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 21/03/2002
Last updated: Friday, 22-Sep-2023 18:24:47 CEST
Author: Nathalie Bosc